Lively_Vectors

Description

Lively_Vectors is a MATLAB Toolbox available on GitHub, for advanced multivariate data analysis, designed to streamline workflows from preprocessing to classification and visualization.

  • Can be used for EEG analyses and other multivariate data, can be used with videos, speech, data from sensors, etc.
  • Can be given custom-built pipeline steps and perform them, it includes visualisation with statistical outcomes.
  • Includes segmentation, filtering, and cleaning of signals and rejection of noisy samples/trials/channels automatically and via visual inspection.
  • Includes different methods for feature extraction.
  • Includes different analyses such as: time domain analyses ( ERP analysis ), frequency domain analysis, time frequency analysis (TF analysis), spatial filtering, source separation, intertrial phase consistency (ITPC), cross-correlation and signal alignment, phase amplitude coupling (PAC), representative similarity analysis (RSA), LDA beamforming, and more.
  • Includes classification:

Linear discriminant analysis (LDA), support vector machine (SVM), random forests, Riemannian geometry-based classifiers . Neural networks (NNs), Recurrent neural networks (RNNs), Convolutional neural networks (CNNs) for classification and feature extraction, Temporal convolutional networks (TCN) and more classifiers.

  • All classifiers can be applied on single data points, across temporal dimension, and in a 2d temporal generalisation plot as well as across space as a searchlight. It has different classification and pre-processing options e.g., cross-validation (CV), z-scoring, domain adaptation methods, etc.
  • Classification and some other functions can run in parallel to harness the power of multiple cores.
  • Includes sleep analyses:

Detects slow oscillations (SOs), sleep spindles, theta activity and other activities that can be provided in a custom file, thus it could detect new activities/patterns if their specifications are provided.

  • Includes statistical analyses:

Provides correction for multiple comparisons in 1d and 2d with cluster-based permutation tests and also correction in space. Includes parametric and non-parametric tests for significance. Visualises correlations with statistics. Visualises statistical results with p-values.

  • Calls some functions from fieldtrip toolbox, and some functions from few toolboxes that are relevant for some analyses.
Assistance with this dataset

We welcome researchers wishing to reuse our data to contact the creators of datasets. If you are unfamiliar with analysing the type of data we are sharing, have questions about the acquisition methodology, need additional help understanding a file format, or are interested in collaborating with us, please get in touch via email. Our current members have email addresses on our main site. The corresponding author of an associated publication, or the first or last creator of the dataset are likely to be able to assist, but in case of uncertainty on who to contact, email Ben Micklem, Research Support Manager at the MRC BNDU.

logo of LivelyVectors- the letters 'l' and 'v,' with the end of 'v' being an arrow. red and purple and blue clouds in background
Year Published
2022
DOI
10.60964/rnd-88v4-wq92
Funders
European Research Council (681607)
Publisher
Cardiff University
Downloaded times
First Published In
Abdellahi MEA, Koopman ACM, Treder MS, Lewis PA
2023. eLife, 12:e84324
Terms

MIT License

Copyright (c) 2022 Mahmoud Abdellahi

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.